Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNNTEFYDRLGVSKDASQDEIKKAYRRMSKKYHPDINKETGAEEKYKEVQEAYETLSDTQKRAAYDQYGAAGANGGFGGFDGGGFGGFDGGGFGGFEDIFSSFFGGGGMRNPNAPRQGDDLQYRVNLSFEEAIFGAEKEVSYNRESSCHTCSGSGAKPGTSPVTCQKCHGSGVINVDTQTPLGTMRRQVTC---DVCQGSGQEIKEKCPTCHGTGH-EKKTHKVSVKIPAGVETGQQIRLTGQGEAGFNGGPYGDLFVIINVLPSQQFERNGSTIYYTLKISFVQAALGDTIDIPTVHGAVEMSIPAGTQTGKTFRLRGKGAPKLRGGGQGDQHVTVNIVTPTKLNDAQKEALHAFAEASGDKMVHPKKKGFFDKVKDALDVD |
| 3LZ8 Chain:A ((113-302)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGIESETPKTLNVKIPAGVVDGQRIRLKGQGT---PGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLV--SKTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAEASFDPRKTW-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LZ8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -45618 for 1103 contacts (-41.4/contact) +
2D Compatibility (PS) -20344 + (NN) -9132 + (LL) 5928
1D Compatibility (HY) -11600 + (ID) 2700
Total energy: -83466.0 ( -75.67 by residue)
QMean score : 0.554
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