Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIFKRKKQVEMPLEKIPAHIGIIMDGNGRWAKKRLKPRVMGHKAGMDALQEVTIAASGLGVKVLTVYAFSTENWSRPDDEVKFIMNLPVEFFDKYVPELDKNNVRVQVIGDTHKLPKATYDAMQRACLRTKHNSGLVLNFALNYGGRSEITNAIKEIAQDVLEAKLNPDDITEDLVANHLMTNSLPYLYRDPDLIIRTSGELRLSNFLPWQSAYSEFYFTPVLWPDFKKDELHKAIVDYNQRHRRFGSV
3UGS Chain:B ((4-225))
--------------MNELKHLAVVMDGNR--------------SQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKK-------LELNEENLTQNLD--L----PLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRERTFGK-
General information:
TITO was launched using:
RESULT:
Template:
3UGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83932 for 1541 contacts (-54.5/contact) +
2D Compatibility (PS) -23135 + (NN) -15153 + (LL) 3640
1D Compatibility (HY) -15200 + (ID) 3600
Total energy: -137380.0 ( -89.15 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_3UGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UGS-query.scw
PDB file :
Tito_Scwrl_3UGS.pdb
: