Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNKNKIERQKRIKRLIQSGQIGTQEEIKLHLKNEGIDVTQATLSRDLREIGLLKLRSPEGKLYYSLSTATSNRFSPALRSYILKVSRASFMLVLNTNLGEASVLANFIDEKGLPEILGTMAGADTLLVICQNEDIAKVFEKELSVGL
1B4B Chain:A ((2-70))
------------------------------------------------------------------------------LVDVFIKLDGTGNLLVLRTLPGNAHAIGVLLDNLDWDEIVGTICGDDTCLIICRTPKDAKKVSNQLLSML
General information:
TITO was launched using:
RESULT:
Template:
1B4B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56023 for 495 contacts (-113.2/contact) +
2D Compatibility (PS) -7540 + (NN) -2534 + (LL) 5188
1D Compatibility (HY) -6800 + (ID) 1100
Total energy: -68809.0 ( -139.01 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_1B4B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B4B-query.scw
PDB file :
Tito_Scwrl_1B4B.pdb
: