Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQTQPLLDFYSEKGYLANVNGQQDIQDVYADVKDLLGGLKK
4JKY Chain:B ((1-203))
MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHG---NVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPP-PPGV------KVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG----
General information:
TITO was launched using:
RESULT:
Template:
4JKY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83813 for 1553 contacts (-54.0/contact) +
2D Compatibility (PS) -22310 + (NN) -15058 + (LL) 80
1D Compatibility (HY) -20000 + (ID) 4800
Total energy: -145901.0 ( -93.95 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_4JKY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JKY-query.scw
PDB file :
Tito_Scwrl_4JKY.pdb
: