Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAAARKSNTRKRRVKKNIESGIAHIRSTFNNTIVTITDTHGNA-ISWSSAGALGFRGSRKSTPFAAQMAAETAAKGSIEHGLKTLEVTVKGP--------GSGREAAIRALQAAGLEVTAIRDVTPVPHNGCRPPKRRRV
4CVN Chain:E ((11-134))
----------------KEKWGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRRG
General information:
TITO was launched using:
RESULT:
Template:
4CVN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24909 for 871 contacts (-28.6/contact) +
2D Compatibility (PS) -12912 + (NN) -7860 + (LL) 1432
1D Compatibility (HY) -6800 + (ID) 2550
Total energy: -53599.0 ( -61.54 by residue)
QMean score : 0.670
(partial model without unconserved sides chains):
PDB file :
Tito_4CVN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CVN-query.scw
PDB file :
Tito_Scwrl_4CVN.pdb
: