Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMISFIFAMDANRLIGKDNDLPWHLPNDLAYFKKITSGHSIIMGRKTFESIGRPLPNRKNIVVTSAPDSEFQGCTVVSSLKDVLDICSGPEECFVIGGAQLYTDLFPYADRLYMTKIHHEFEGDRHFPEFDESNWKLVSSEQGTKDEKNPYDYEFLMYEKKNSSKAGGF
3JW5 Chain:B ((9-168))-VSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPGRRNIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFGGAQIFDLFLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHVYEKQQ-------


General information:
TITO was launched using:
RESULT:

Template: 3JW5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 747 -109569 -146.68 -684.80
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain B : 0.85

3D Compatibility (PKB) : -146.68
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.85
QMean score : 0.573

(partial model without unconserved sides chains):
PDB file : Tito_3JW5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3JW5-query.scw
PDB file : Tito_Scwrl_3JW5.pdb: