Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKAKFQRTKPHVNIGTIGHVDHGKTTLTAAITKVLHDK-FPDLNETKAFDQ---------------IDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFDEDAPVVRVSALKALEGD--------AKWV--ASVEELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVVTKPGT-TTPHTEFEGQVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVT-------------LPEGTEMVMPGDNTNISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIIK |
| 1SKQ Chain:A ((4-427)) | ---------KPHLNLIVIGHVDHGKSTL---VGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEE-----------MRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNK--VRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQL-ELPPKPV---DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFM---PAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVV-----WHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SKQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -147307 for 2756 contacts (-53.4/contact) +
2D Compatibility (PS) -39345 + (NN) -21492 + (LL) 2812
1D Compatibility (HY) -28800 + (ID) 6750
Total energy: -240882.0 ( -87.40 by residue)
QMean score : 0.507
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