Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLHTNHGVITLKLDEEKAPETAANFKEYV---KSGHYDNTVFHRVINNFMIQGGGFEP-----GMKQKPTRAPIKNEANNGLTN-KVGSIAMARTMDPHSASAQFFINVADNDFLNHTAPTTQGWGYAVFGEVVEGMDVVNKIKGVATTMRSGHQDVPAEDVIIEKAEIVEE
2RMC Chain:G ((22-163))
--------GRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFP---DENFKLKHYGIGWVSMANA-GPDTNGSQFFITL--------TKPTWLDGKHVVFGKVLDGMTVVHSIELQAT---DGH-DRPLTDCTIVNSGKIDV
General information:
TITO was launched using:
RESULT:
Template:
2RMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37645 for 972 contacts (-38.7/contact) +
2D Compatibility (PS) -14242 + (NN) -9293 + (LL) 1772
1D Compatibility (HY) -10400 + (ID) 2700
Total energy: -72508.0 ( -74.60 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_2RMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RMC-query.scw
PDB file :
Tito_Scwrl_2RMC.pdb
: