Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDDAFSEEGSAQPRHDAQRPALAPRSDGFDIHTYHPDFVADPYPLLRLIRSRAPVCRDQASIWWISRYADVSACLRDRRFSADPARLGAAGVRQGGASWFGHQQLQPLARFYDNFMLFNDAPRHTRLRRLFAPAFGPDAVRRWEA---RIEVLVEELLDSLLERREPDLLRDFAEPLTIRVAAELFGFPREDTGQLLPWGRDLAAGLDLAASHGDAGQINRSAVAFS-DYLQRQARGWSDGSSRPPSGAAPSILDGAAMLEAGLGLEDLVAAYAMVFMAAFETTISMVGNATLALLTHPDQLDLLRRCPELAANAVEELLRFDGAVRGGVRCTLEEVEIGGQRIPPGEKVWLSFLAANRDPEMFAAPDRLQLQRANAKQHVAFAHGPHYCLGAYLARLELQCALRGLVRR--RFALASEPTDLRWRRSSVFRTLERLPIVPEGDAQKTCE |
| 1OXA Chain:A ((10-403)) | --------------------------------SFHVDWYST-YAELRETAPVTPVRFLGQDAWLVTGYDEAKAALSDLRLSSDPKK-KYPGVEVEFPAYLGFPE--DVRNYFATNMGTSDPPTHTRLRKLVSQEF---TVRRVEAMRPRVEQITAELLDEVGDSGVVDIVDRFAHPLPIKVICELLGVDEAARGAFGRWSSEILVMDPERAEQ--RGQAAREVVNFILDLVERR-------RTEPGDDLLSALISVQDDDDGRLSADELTSIALVLLLAGFEASVSLIGIGTYLLLTHPDQLALVRADPSALPNAVEEILRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRDPSQFPDPHRFDVTR-DTRGHLSFGQGIHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLRGIDHLPVRLDG------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OXA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -235250 for 3257 contacts (-72.2/contact) +
2D Compatibility (PS) -42323 + (NN) -22543 + (LL) 1436
1D Compatibility (HY) -26000 + (ID) 6650
Total energy: -331330.0 ( -101.73 by residue)
QMean score : 0.489
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