Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMAR
3JVH Chain:A ((24-178))
FRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVV--
General information:
TITO was launched using:
RESULT:
Template:
3JVH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132583 for 1328 contacts (-99.8/contact) +
2D Compatibility (PS) -16900 + (NN) -11016 + (LL) 244
1D Compatibility (HY) -15600 + (ID) 4800
Total energy: -180655.0 ( -136.04 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3JVH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JVH-query.scw
PDB file :
Tito_Scwrl_3JVH.pdb
: