Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDINEIREYLPHRYPFLLVDRVVELDIEGKRIRAYKNVSINEPFFNGHFPEHPIMPGVLIIEAMAQAAGILGFKML---DVKPADGTLYYFVGSDKLRFRQPVLPGDQLQLHAKFISVKRSIWKFDCHATVDDKPVCSAEI--ICAERKL
3CF8 Chain:E ((14-159))
---IEHILQILPHRYPMLLVDRITELQ-ANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE-
General information:
TITO was launched using:
RESULT:
Template:
3CF8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119613 for 1039 contacts (-115.1/contact) +
2D Compatibility (PS) -15207 + (NN) -5674 + (LL) 720
1D Compatibility (HY) -16800 + (ID) 3550
Total energy: -160124.0 ( -154.11 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_3CF8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CF8-query.scw
PDB file :
Tito_Scwrl_3CF8.pdb
: