Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYSKIPAGKDLPNDIYVAIEIPANHAPIKYEIDKDTDCLFVDRFMATPMFYPANYGFIPNTLADDGDPLDVLVVTPYPVAPGSVIRARPVGVLHMTDEAGGDAKLIAVPHDKLSVLYKDVKEYTDLPALLLEQIKHFFENYKDLEKGKWVKVEGWGNADAARAEITKAVAAFQK
3Q4W Chain:A ((4-172))
--FHELEPGPEVPEVVYALIEIPKGSRN-KYELDKKTGLLKLDRVLYSPFFYPVDYGIIPQTWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVE--DPYFNDWKDISDVPKAFLDEIAHFFQRYKELQ-GKTTKIEGWGNAEEAKREILRAIEMYKE
General information:
TITO was launched using:
RESULT:
Template:
3Q4W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81937 for 1333 contacts (-61.5/contact) +
2D Compatibility (PS) -18591 + (NN) -13215 + (LL) 688
1D Compatibility (HY) -18400 + (ID) 3600
Total energy: -135055.0 ( -101.32 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_3Q4W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q4W-query.scw
PDB file :
Tito_Scwrl_3Q4W.pdb
: