Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAT---LFDPIVLGDLELPNRIVMAPLTRCRADEG-RVPNA-LMAEYYAQRADAGLILSEATAVTPMGVGYPDTPGIWSDDQVRGWSNVTKAVHAAGGRIFLQLWHVGRI-----------SDPLYLNGELPVAPSAIAAEGH-----VSLVRPKRPYVTPRALDTEEIAD-IVEAYRQGAERAK-AAGFDGVEIHGANGYLLDQFLQDSTNKRTD--RYGGSIENRARLLLEVTDAAISVWGAQRVGVHLAPRADSHDMGDSNRLETFSHVARELGKRGIAFI-CAREAQADDSIG---VALKKAFGGPYIANEQFTLDSANAILAKGDADAVAFGVPFIANPDLVERLRQGAELNPPRPETFYTGGTEGYLDYPTLA |
3ATY Chain:B ((1-376)) | MATFPELLRPLKLGRYTLRNRIIMAPLTRCQATEDDHVPRTESMLKYYEDRASAGLIIAEATMVQPNYTGFLTEPGIYSDAQIEEWRKIVDAVHKKGGLIFLQLIHAGRAGIPEKILQQSKSDQDPLAGRL-LAASAIPIKDHRIPAYFAASGEKETYGVPEELTDDEVRDGIIPLFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQQIGDVVAWVRGSYSGVKISNLRYDFEEADQQIREGKVDAVAFGAKFIANPDLVERAQQNWPLNEPRPETYYTRTAVGYNDYPT-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ATY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152819 for 3058 contacts (-50.0/contact) +
2D Compatibility (PS) -37780 + (NN) -19711 + (LL) 180
1D Compatibility (HY) -26000 + (ID) 7850
Total energy: -243980.0 ( -79.78 by residue)
QMean score : 0.620
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