Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKLLPLAVLAALSSVHVASAQAADVSAAVGATGQSGMTYRLGLSWDWDKSWWQTSTGRLTGYWDAGYTYWEGGDEGAGKHSLSFAPVFVYEFAGDSIKPFIEAGIGVAAFSGTRVGDQNLGSSLNFEDRIGAGLKFANGQSVGVRAIHYSNAGLKQ----PNDGIESYSLFYKIPI |
2J1N Chain:A ((299-346)) | ---------------------------------------------------------------------------------------------------------------------------------DVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J1N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2821 for 191 contacts (-14.8/contact) +
2D Compatibility (PS) -4964 + (NN) -3574 + (LL) 6896
1D Compatibility (HY) -1200 + (ID) 300
Total energy: -5963.0 ( -31.22 by residue)
QMean score : 0.281
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