Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPLLFSALLLLSGHTQASEWNDSQAVDKLFGAAGVKGTFVLYDVQRQRYVGHDRERAETRFVPASTYKVANSLIGLSTGAVRSADEVLPYGGKPQRFKAWEHDMSLRDAIKASNVPVYQELARRIGLERMRANVSRLGYGNAEIGQVVDNFWLVGPLKISAMEQTRFLLRLAQGELPFPAPVQSTVRAMTLLESGPGWELHGKTGWC---FDCTPELGWWVGWVKRNERLYGFALNIDMPGGEADIGKRVELGKASLKALGILP
4WZ5 Chain:A ((5-246))
---------------TENTSWN------KEFSAEAVNGVFVLCKSSSKSCATNDLARASKEYLPASTF-IPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYLNKLSASKENQLIVKEALVTEAAPEYLVHSKTGFSGVGTESNPGVAWWVGWVEKETEVYFFAFNMDID-NESKLPLRKSIPTKIMESEGII-
General information:
TITO was launched using:
RESULT:
Template:
4WZ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127100 for 1944 contacts (-65.4/contact) +
2D Compatibility (PS) -25567 + (NN) -11044 + (LL) 1344
1D Compatibility (HY) -20400 + (ID) 4400
Total energy: -187167.0 ( -96.28 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_4WZ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WZ5-query.scw
PDB file :
Tito_Scwrl_4WZ5.pdb
: