Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVFKDATAMAQAIKQHKVSSQELVEQAIYKIEEQNVSVNAVVSKQYNEARQAAKYANASNAPFAGVPILLKDLGQNQKGQLSTSGSQLFK--HYYAKQTDYLVQSFEKLGFIILGRTNTPEFGFKNISDSQLHGNVNLPFDHSRNAGGSSGGAAAAVSSGMVPIAGASDGGGSIRIPASFNGLIGLKPSRGRIPVGPSSYRGWQ---GASSHFALTKSVRDTKRLLYYLQSYQVESPFPLKKLSKESLFE--FSVSKPLKIAVLMDSPL-KTKVSSEAKAAIKEAADFLSQKGNHLELVEQPLDGI-HSMKTYCMMNSVETAAMFDGIEKSLGRSMEFSDMELMTWAMYQSGQRVLAKDYSKLLDSWDQFAATMARFHE-NYDLILTAATNQPAPFHGQFDLDETLQKQLRHMREFSVSEQQDLIWKMFEDSMAWTPFTHQPNLTGQPSLAIPTHLTKEGLPLGVQLTAAKGREDLLLAVAELFEKEKQFKGPVCH |
3A2Q Chain:A ((6-478)) | -LWQDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRES---ELASGPFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLV-TDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAP-TASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVNDAYPEALGDRSFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGT--DLEGR-------Q----SAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWVARRPQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3A2Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -76159 for 4507 contacts (-16.9/contact) +
2D Compatibility (PS) -49848 + (NN) -25828 + (LL) 1848
1D Compatibility (HY) -24400 + (ID) 7300
Total energy: -181687.0 ( -40.31 by residue)
QMean score : 0.507
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