Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKCVLS
1KAO Chain:A ((1-165))
MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KAO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91584 for 1318 contacts (-69.5/contact) +
2D Compatibility (PS) -18384 + (NN) -6795 + (LL) 652
1D Compatibility (HY) -20800 + (ID) 4050
Total energy: -140961.0 ( -106.95 by residue)
QMean score : 0.647
(partial model without unconserved sides chains):
PDB file :
Tito_1KAO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KAO-query.scw
PDB file :
Tito_Scwrl_1KAO.pdb
: