Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTS--------------------HVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKE--APKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSVLAQ
3QG2 Chain:A ((25-231))
EGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKET--KKLQNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKEDFDEDV-YIINKVEDLIVLLGK----LNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISV-----SDVYTSNNTTLDFIIYKKTNN--
General information:
TITO was launched using:
RESULT:
Template:
3QG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64557 for 1174 contacts (-55.0/contact) +
2D Compatibility (PS) -18796 + (NN) -6487 + (LL) 580
1D Compatibility (HY) -16800 + (ID) 2800
Total energy: -108860.0 ( -92.73 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3QG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QG2-query.scw
PDB file :
Tito_Scwrl_3QG2.pdb
: