Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDLPPQLSFGLYVAAFALGFPLNVLAIRGATAHARLRLTPSLVYALNLGCSDLLLTV---SLPLKAVEALASGAWPLPASLCPVFAVAHFFPLYAG-GGFLAALSAGRYLGAAFPL-GYQAFRRPCYSWGVCAAIWALVLCH-L---GLVFGL-EAPGGWLDHSNTSLGINTPVNGSPVCLEAWD---PASAGPAR-FSLSLLLFFLPLAITAFCYVGCLRALARSGLTHRRKLRAAWVAG--GALLTL-LLCVGPYNASNV---------ASFLYPNLGG------SW-RKLGL--ITGAWSVVLNPL-VTGYLGR--GPGLKTVCAARTQGGKSQK |
| 4RGL Chain:A ((8-335)) | YQPPYTITPAIVNLVAEIGEIIGRY-----TVLAEQNLTPRLRRENRIRTIQASLAIENNTLTLEQVTAVIDGKRVLGHPR-EIQEVRNAFATYEAMEDWDASV-EGDLLAAHELLMRGLVDETGRYRSGGVGIFRGEQLVHMAPPADRVPKLMADLLDWLENTN-----EHPLVASCIFHYEFEFIHPFADGNGRMGRLWQTLILRNWK-PLLAYLPVETVIRDRQEDYYRVLAVADSQADATPFVEFMLGALRDAVREAVSTDHQVTDQVAALIRAIGGGELSSNDLMQALGLSHRPTFRNNYLNPAMEDEWIERTQPDSPRSPTQRYRLTGKGQR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RGL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193971 for 2007 contacts (-96.6/contact) +
2D Compatibility (PS) -29781 + (NN) -6803 + (LL) 884
1D Compatibility (HY) -5200 + (ID) 2900
Total energy: -237771.0 ( -118.47 by residue)
QMean score : 0.177
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