Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGTRSLFVNFIGKLNDKSNEITSKLVICPPFTSLPGNIE-LNSN-ISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERTH---ETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKSRLPIHGEYT---VAYEPIWAIGTGHVPSNNAIAEVIEVIQSYTSKK---------HVIYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
4MKN Chain:A ((21-260))
--FFVGGNWKCNGSVANVAKLVDELNAGTIPRGVDVVVAPPFIYIDYVMQHLDRDKYQLSAQNAWIGGNGAFTGEVSAEQLTDFGVPWVILGHSERRSLFGESNEVVAKKTSHALAAGLGVIACIGETLEQRNSGSVFKVLDAQMDALVDEVKDWTKVVLAYEPVWAIGTGVVASPEQAQEVHAYLRQYCAKKLGAAVADKLRIIYGGSVSDTNCKDLSKQEDIDGFLVGGASLKGAAFVTICNAAGPKA
General information:
TITO was launched using:
RESULT:
Template:
4MKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132453 for 1800 contacts (-73.6/contact) +
2D Compatibility (PS) -24046 + (NN) -4547 + (LL) 180
1D Compatibility (HY) -18400 + (ID) 4250
Total energy: -183516.0 ( -101.95 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_4MKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKN-query.scw
PDB file :
Tito_Scwrl_4MKN.pdb
: