Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNTFLICDECQAVN-IRTLQKKLEKLDPDAEIVIGCQSYCGPGRRKTFTFVNNRPLA-------ALTEEELIEKVSQQLKKPRDPEEEERLRKRHEERKRRKEEQDRKLKEKLEKRKAQQ
2OKA Chain:A ((9-86))
---VITYCTQCQWLLRAAWLAQELLSTFADDLGKVCLEP--G-TGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRIDPQR-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2OKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22269 for 440 contacts (-50.6/contact) +
2D Compatibility (PS) -7711 + (NN) -8550 + (LL) 3336
1D Compatibility (HY) -2000 + (ID) 500
Total energy: -37694.0 ( -85.67 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_2OKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OKA-query.scw
PDB file :
Tito_Scwrl_2OKA.pdb
: