Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE
2HVD Chain:C ((4-152))
CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
General information:
TITO was launched using:
RESULT:
Template:
2HVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69356 for 1116 contacts (-62.1/contact) +
2D Compatibility (PS) -16191 + (NN) -7011 + (LL) 0
1D Compatibility (HY) -17200 + (ID) 3850
Total energy: -113608.0 ( -101.80 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_2HVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HVD-query.scw
PDB file :
Tito_Scwrl_2HVD.pdb
: