Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGII---SLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFA---SVGDINLSEPKALIGFAGRRVIEQTINEK-L-------------PDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVTK |
| 3N6R Chain:B ((292-518)) | -------------------------------------------------TLVPD-NPNTPYDMKELIHKLADEGDFYEIQEE------------------------FAKNIITGFIRLEGRTVGVVANQPLVLAGCLDIDSSRKAARFVRFCDAFEIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYA---YGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAVMGAKGATEIIHRGDLGDPEKIAQHTADYEERFANPFVASERGFVDEVIQPRSTRKRVARAFASLRNKS- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3N6R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -120355 for 1687 contacts (-71.3/contact) +
2D Compatibility (PS) -22040 + (NN) -4100 + (LL) 4832
1D Compatibility (HY) -6000 + (ID) 1800
Total energy: -149463.0 ( -88.60 by residue)
QMean score : 0.453
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