Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDFLGLLPNAFLHFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKGFRAVKEFLSEQLEN-IDL--NYSNLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQILN--------QKTPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL
1LZO Chain:B ((59-244))
-----------------------------------------------------FSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQN--KTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDIIKSA
General information:
TITO was launched using:
RESULT:
Template:
1LZO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83801 for 1314 contacts (-63.8/contact) +
2D Compatibility (PS) -18533 + (NN) -5863 + (LL) 4728
1D Compatibility (HY) -13600 + (ID) 3400
Total energy: -120469.0 ( -91.68 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_1LZO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LZO-query.scw
PDB file :
Tito_Scwrl_1LZO.pdb
: