Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILRLENDTRYFKDFTQVLALNYGSKNELSRAFKSLLENPPNHINNIESL-ENEISHRLDTHDLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELKC
2VG3 Chain:A ((53-284))
-DRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGSA--
General information:
TITO was launched using:
RESULT:
Template:
2VG3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98201 for 1838 contacts (-53.4/contact) +
2D Compatibility (PS) -23924 + (NN) -5394 + (LL) 328
1D Compatibility (HY) -13200 + (ID) 4300
Total energy: -144691.0 ( -78.72 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_2VG3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VG3-query.scw
PDB file :
Tito_Scwrl_2VG3.pdb
: