Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPKRMKCFSQKWLVFFVTHWLLLASLSHAKMAFESNIDTKALEAFGVNASFLSQMPGALKKVNKEEEWKKLVKRFDVNYQFIPIIKNMLIGASVPQEFLFLAMAESKFSSRAYSRKKAVGIWQFMPSTAKELGLKVNHYIDERRDPIKSTQAAIAYLKRLYKQTGEWYLVAMAYNYGLRKVQNAIKAAGTSDIKVLLDEDKKYLPKETREYIRSILSLALKFNSLDNLKDKEYLLNRGARVSLVGVPFKRHTSLVQVAKNLNLSLETLKSYNHQFRYNILPSKDPTYTIYIPYEKLALFKQRQLKQNKNAQANPKSPFITHVVLPKETLSSIAKRYQVSISSIQLANNLKDSNIFIHQRLIIPTNKKLLATREF-- |
4EBY Chain:A ((1-200)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------CRTSCPLALASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKD----RIQMGSRVLVPFPCECQPGDFLGHNFSYSVRQEDTYERVAISNYANLTTMESLQARNPFP-ATNIPLSATLNVLVNCSC---------GDESVSKDFGLFVTYPLRPEDSLSSIARSSGVSADILQRYNPGVNF-NSGNGIVYVPGRDPNGAFPPFKS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4EBY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 6144 for 1529 contacts (4.0/contact) +
2D Compatibility (PS) -20393 + (NN) 1650 + (LL) 15652
1D Compatibility (HY) 400 + (ID) 1350
Total energy: 2103.0 ( 1.38 by residue)
QMean score : 0.283
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