Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYLNNDFEDLMKNRRSIREYDET-VKISQEEMKAILEDAVTAPSSVNMQPWRFVVVESDAGKEKLSSLVR-FNTRQNESSSAMILVFGDLQNFENGEKIYGESVERGLMPAEVKEQQMAKLSQYFASIPRSEAERVVLIDGGIVAMQLMLVARAHGYDTNPIGGFERTEVAEAFNMDPE-RYVPVMIVSIGKAKNSGYQSYRLPITDVTTFA
3GBH Chain:A ((5-213))
-LTRINDFNEVLNSRKSVKVFD-ENYKIPREEMDEIITKATKAPSSVNMQPWRIAVVQSDEMKEKVKE-SFGFNSRQLTTSSAMLIIFGDLQNYEKAEQIYGDAVEQQLMTEDIKAQLLDWILPYYKNLSREGMKDIVNIDSSLMAMQLMLTAKAHGYDTNPIGGFDKENIADIIGYD-SDRYVPVLAIAIGKKAQDAHDSVRLPIDDVREFL
General information:
TITO was launched using:
RESULT:
Template:
3GBH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83586 for 1503 contacts (-55.6/contact) +
2D Compatibility (PS) -22383 + (NN) -11622 + (LL) 348
1D Compatibility (HY) -21200 + (ID) 4900
Total energy: -143343.0 ( -95.37 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_3GBH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GBH-query.scw
PDB file :
Tito_Scwrl_3GBH.pdb
: