Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIFPSMGTLETTANLLAGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDETL--VRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
4FF7 Chain:B ((30-245))
-------------------------ASIP-----ENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILSIGETLEEKKAGKTLDVVERQLNAVLE--EVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPE-FVDIIN-------
General information:
TITO was launched using:
RESULT:
Template:
4FF7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103760 for 1687 contacts (-61.5/contact) +
2D Compatibility (PS) -23195 + (NN) -9963 + (LL) 2724
1D Compatibility (HY) -16000 + (ID) 3650
Total energy: -153844.0 ( -91.19 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_4FF7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FF7-query.scw
PDB file :
Tito_Scwrl_4FF7.pdb
: