Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKI---AECTGKIVVAGCGTSGVAAKKLVHSFNC--IERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
3FKJ Chain:A ((13-171))
------------------ENLYFQGMSVAHENARRIISDILGKQNIE-RVWFVGCGGSLTGFWPGKYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVILASQQGNTAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWARYPETVDPAQQKAAYSLWLALEILAQTE---------------------------
General information:
TITO was launched using:
RESULT:
Template:
3FKJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118467 for 1263 contacts (-93.8/contact) +
2D Compatibility (PS) -16341 + (NN) -6502 + (LL) 2980
1D Compatibility (HY) -3600 + (ID) 1400
Total energy: -143330.0 ( -113.48 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_3FKJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FKJ-query.scw
PDB file :
Tito_Scwrl_3FKJ.pdb
: