Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VTETIIRFENVTKQFDNDPP----VLDNVSFEIEKGKFYTLLGPSGCGKTTILRLIAGFLEASKGQIYLG-----DKVINQIPANKRPVNTVFQ--DYALFPHLNVYENVAFGLRIKKLKKEAIDEKVKEALRFVNL-KGYEKREISEMSGGQRQRVAIARAIVNEPEVILLDEPLSALDLKLRTEMQYELRDLQKRLGITFIFVTHDQEEALAMSDEIFVLNKGEIQQSGTPIDIYDEPINKFVADFIGESNIVNGKMIQDFEVEFVERRFECVDQGFRPNEVVEVVIRPEDLEITSAEKGQLQVTVDWMLFRGVHYEVGCIDIDGNEWLVHTTRKVRVGDKIGLAFEPEAIHVMRLGETEEEFDKRLDSYDEVQ |
| 4MKI Chain:A ((7-238)) | -----IKVENVSFIYNEGTPYATVALKDINFSIDDEEFVGIIGHTGSGKSTLIQQLNGLLKPSKGKIYINGIDITDKKVS-LKDIRKQVGLVFQYPEYQLFEE-TVFKDIAFGPSNLGLSEEEVKERVYEAMEIVGISKELADKSPFELSGGQKRRVAIAGILAMRPKILILDEPTAGLDPKGKQEILNKIKEIHDKYKMITILVSHNMEDIARIADKIIVMNRGKIELIGTPREVFRE----------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MKI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -114528 for 1711 contacts (-66.9/contact) +
2D Compatibility (PS) -24687 + (NN) -10991 + (LL) 11276
1D Compatibility (HY) -20000 + (ID) 3750
Total energy: -162680.0 ( -95.08 by residue)
QMean score : 0.564
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