Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MENYSHRFQVNLAGMIDILSNHLYDEKDVYIRELLQNATDAIRARK--------KIDSTLEGKIHASLTGDNNEKTLIIEDNGIGLTEDEVHAFLATIANSSKGEKNF----DGESSNDFIGRFGIGLLSCFIVSDEIVMISTSQKDGGTTEWRGKADGTYSVRKIETDTREP---GTQVYLRLRAGLEDHPECEDVEYLINTLKKYGASLESNIIVEMNGLEEEINSWTKQFSDKETLSTLSREQIIQYGEYILGTHFQDYFLIENESGRTFGIAYMIPHAVQMNAIRKNTVFLNKMFVTSEANNILPDWSFFAKCVIWTDELQPVASREAFYKNERLTSVASELGVALKKGIETLPEEALMKLLATHYLGFKALASEDAPFLKLIYPYLPVRTLNGEEKLGDIIAKNDVIYYTYSVDDFRQIKDIARSSGMTLINGGYSYDSPILAQLSYFVEGTEFVLIQPEEMTDKLRPMTADEKQAYQPILTEMNSMMAEFDTDVLIKHFEPKDLPIIFIHSTATQELRELERAVEETTSVFSDILESIQKEQEPAPLAHLYLNLDNELIKRLFTSEKTVKELSVIVNVLYIQALLLGHYPLKRKEMVLMNQNMLRILEML |
| 3VHD Chain:A ((15-203)) | -------FQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKE--LHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKS--GTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVI-TKHNDDEQYAWESSAGGSFTVR---TDTGEPMGRGTKVILHLK---EDQTEYLEERRIKEIVKKH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VHD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -67350 for 1305 contacts (-51.6/contact) +
2D Compatibility (PS) -18850 + (NN) -9241 + (LL) 34200
1D Compatibility (HY) -14800 + (ID) 3200
Total energy: -79241.0 ( -60.72 by residue)
QMean score : 0.530
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