Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLRLQFHKKLPFHDLNIDYTFEKPVTAMMGASGSGKSTLFQCVSGLKSIDGGIIEFDGTPWDDSNISLHLPVTERKVGYLFQNLALFPNMNVYENIAFGLKVKKKKKKEQAEIQQQVRKMSDYLQISHLLYSSVQKLSGGEKQRVAMARAMITEPKLLLLDEPFNGLDEETRLICMKLVGQMAKDFHIPVIFVTHYASEAEMMTEEILVMREGRLEKRKS
4P33 Chain:B ((30-214))
------------------------IVGLLGPNGAGKTTTFYMVVGIVPRDAG--NIIIDDDDISLLPLH-ARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE--DRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDQPFAGVD-PISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHL-----
General information:
TITO was launched using:
RESULT:
Template:
4P33.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89151 for 1400 contacts (-63.7/contact) +
2D Compatibility (PS) -20146 + (NN) -8748 + (LL) 3064
1D Compatibility (HY) -10800 + (ID) 3000
Total energy: -128781.0 ( -91.99 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_4P33.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P33-query.scw
PDB file :
Tito_Scwrl_4P33.pdb
: