Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VDFVIEMLGIRKEFSG-FVANDNITLQLKQGEIHALLGENGAGKSTLMNVLFGLYEPDGGEIRVRGTKENINSPNKANELGIGMVHQHFMLVDKFTVAENIILGKEPSKLGVIEKKKAIEEIKEISDRYGLRVDPNAIVRDISIGMQQRVEILKTLYRGADILIFDEPTAVLTPQEIKELIQIMRSLIKE-GKSIILITHKLKEIMDVCDRVTVIRRGKGMGTVNVPETTPQDLANLMVGREVVFTTEKIDANPGKDVLEVKDLVVKESRGVESVRGLNLTVRAGEIVGIAGVDGNGQSELISAIAGLSKVTSGSILLNGEHIENKKPRKITEAGLGHIPEDRHKHGLVLEMSLGENIALQTYYKKPISSKGFLNHKAMYDFARELIEEYDVRASSEYVAAKSLSGGNQQKAIIAREIHRNPDFLIAAQPTRGLDVGAIEFIHRRLIEQRDNGKAVLLMSFELDEIMNVSDRIAVIYEGKIVAIVDPKETTEQELGLMMAGSSKQEAEMGEKEHV |
1Z47 Chain:A ((11-355)) | GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN---VGLVFQNYALFQHMTVYDNVSFGLREKRV---PKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGT-PEEVYEKPGTLFVASFI-GESNVWTRAVQNGRIEVAGAALPVDPAVSEGSEVAVVVRPKDVELQP-----------------------------------------------------------------------------------------------------------------ASEREAHAQVVRSAFKGSYSACWIRTKDG---------------------EVWEVHVPSADRHRWSPGAWVHMNVTRWFIFPR---------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1Z47.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -149898 for 2766 contacts (-54.2/contact) +
2D Compatibility (PS) -37312 + (NN) -12413 + (LL) 11320
1D Compatibility (HY) -14400 + (ID) 3950
Total energy: -206653.0 ( -74.71 by residue)
QMean score : 0.406
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