Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHKVGILGGTFDPPHLAHLHMAEEAKKQLELEKILFLPNKIPPHKHISGMASINERVEMLQLMIEGIDSFEIDTRELMRTGKSYTYDTMRDMIIEQ-PDTDFYFIIGGDMVEYLPKWYHIDDLVKMVTFVGVNRPLYQPE--V--------------------P-Y-DVVKIDMPKTTISSTEIRNDIEHA---EAFLPEKVWSYIKEHQLYGKK
1K4M Chain:A ((1-213))
MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQP-EANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR--
General information:
TITO was launched using:
RESULT:
Template:
1K4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123915 for 1431 contacts (-86.6/contact) +
2D Compatibility (PS) -19704 + (NN) -4757 + (LL) -44
1D Compatibility (HY) -10800 + (ID) 3250
Total energy: -162470.0 ( -113.54 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_1K4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K4M-query.scw
PDB file :
Tito_Scwrl_1K4M.pdb
: