Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLTKIEIITRPNRFHLFQKELAKIGVSGLTVTKALGTGLEKGFIELYRGTKKESNIHERMKIEIVVSTVPVEDVLRVVKETLRTGEPGDGKVFIYPLAEVVKISTGETGIDALQDKPSK
3N5B Chain:A ((1-112))
---MKKVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKVEIVVEDNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVIRIRTGEKNTEAV------
General information:
TITO was launched using:
RESULT:
Template:
3N5B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45863 for 717 contacts (-64.0/contact) +
2D Compatibility (PS) -12430 + (NN) -5606 + (LL) 12
1D Compatibility (HY) -6000 + (ID) 2100
Total energy: -71987.0 ( -100.40 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_3N5B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N5B-query.scw
PDB file :
Tito_Scwrl_3N5B.pdb
: