Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLVATAPR-VAVLVEYNDREVLEDEVKIKVQFASPKHGTEVVDFRGISPFIDEEFSPEWNLFVSRETNSARGIVFGEFQLGNMVVGEVVERGSKVTEYALGDIVCS----------------------------------------------------YGPIMETVIVKAVDNYKLRKLPKGANWKNAVCYD-PAQFAMSGVRD-AHVRAGDYVVVVGLGAIGQIAIQLAKKAGASVVIGVDPLSHRREIAEKHGADATFDPITTD--VGLEVKRLTGKLGADSIIETSGNAAALQAALRGIAYG-GTISYVAFAKPFPEGFNLGREAHFNNAKIVFSRAASEPNPDYPRWDRKRIEETCWELLMNGYLDCSDIIDPVVPFADSAESYMKYVDQQPDLSIKMGITL |
| 3UKO Chain:A ((9-376)) | CKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCH-TDAYTWSGKDPE-----------------------GLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHD-VS--VAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLT-DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQ-EISTRPFQLVTGRVWKGTAFGGF--------KSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDL-LHEGT--CLRCVLDT |
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General information:
TITO was launched using:
| RESULT:
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Template: 3UKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171578 for 2751 contacts (-62.4/contact) +
2D Compatibility (PS) -34075 + (NN) -12809 + (LL) 1448
1D Compatibility (HY) -10000 + (ID) 3550
Total energy: -230564.0 ( -83.81 by residue)
QMean score : 0.473
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