Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMANYPKELPAQTQSRQPGIESEMNPSPVYEYEDYKGADKLKGKVALITGGDSGIGRAVSVAYAKEGADIAIVYKDEHEDAEETKKRVEQEGVKCLLIAGDVGEEEFCNEAVEKTVKELGGLDILVNNAGEQHPKESIKDITSEQLHRTFKTNFYSQFYLTKKAIDYLKPGSAIINTTSINPYVGNPTLIDYTATKGAINAFTRTMAQALVKDGIRVNAVAPGPIWTPLIPATFPEETVAQFGQDTPMGRPGQPVEHVGCYVLLASDESSYMTGQTLHVNGGNFVTT
4BMN Chain:C ((7-249))--------------------------------------RLLNKTAVITGGNSGIGLATAKRFVAEGAYVFIVGRRR----KELEQAAAEIGRNVTAVKADVTKLEDLDRLYAIVREQRGSIDVLFANSGAIEQK-TLEEITPEHYDRTFDVNVRGLIFTVQKALPLLRDGGSVILTSSVAGVLGLQAHDTYSAAKAAVRSLARTWTTELKGRSIRVNAVSPGAID----------ELRAKFAAATPLGRVGRPEELAAAVLFLASDDSSYVAGIELFVDGG-----


General information:
TITO was launched using:
RESULT:

Template: 4BMN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1258 -105447 -83.82 -462.48
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain C : 0.75

3D Compatibility (PKB) : -83.82
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.535

(partial model without unconserved sides chains):
PDB file : Tito_4BMN.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4BMN-query.scw
PDB file : Tito_Scwrl_4BMN.pdb: