Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKAKFQRTKPHVNIGTIGHVDHGKTTLTAAITKVLHDK-FPDLNETKAFDQ---------------IDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFDEDAPVVRVSALKALEGD--------AKWV--ASVEELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVVTKPGT-TTPHTEFEGQVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVT-------------LPEGTEMVMPGDNTNISVKLIQPVAMDEGL------RFAIREGGRTVGAGRVTKIIK |
| 1JNY Chain:B ((4-427)) | ---------KPHLNLIVIGHVDHGKSTL---VGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDR---------------MRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNK--VRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQL-ELPPKPV---DKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFM---PAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVV-----WHPTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMRDMGKTVGVGIIVDV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JNY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -154945 for 2812 contacts (-55.1/contact) +
2D Compatibility (PS) -38280 + (NN) -17916 + (LL) 3024
1D Compatibility (HY) -28800 + (ID) 6650
Total energy: -243567.0 ( -86.62 by residue)
QMean score : 0.500
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