Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTVRVGDPELVLDPYDYDFHEDPYPYYRRLRDEAPLYRNEERNFWAVSRHHDVLQGFRD----STALSNAYGVSLDPSSRTSEAYRVMSMLAMDDPAHLRMRTLVSKGFTPRRIRELEPQVLELARIHLDSALQTESFDFVAEFAGKLPMDVISELIGVPDTDRARIRALADAVLHREDGVADVPPPAMAASI---------ELMRYYADLIAEFRRRPANNLTSALLAAELDGDRLSDQEIMAFLFLMVIAGNETTTKLLANAVYWAAHHPGQLARVFADHSRIPMWVEETLRYDTSSQILARTVAHDLTLYDTTIPEGEVLLLLPGSANRDDRVFDDPDDYRIGREIGCKLVSFGSGAHFCLGAHLARMEARVALGALLRRIRNYEVDDDNVVRVHSSNVRGFAHLPISVQAR |
4GGV Chain:A ((29-388)) | ----------------WNIHPD-HLWLRGQRPESPVVFDETQGVWNVYGYPEAMDILNDHDTFTSDLAHLLPVSVDAPLLEGD------MSQMDPPRHRKYRQLVSRAFTPRLVADMETRVADITRELLDAVDGKPEIEIAADLAYPLPVIVIAELLGVPAGDRDLFKKWADDIIEGFSGFSFLDTSGQGEQDVRDATERLRPLLDYMAGHVTERRRTPREDLLTHLVQAEVDGERLTDNEIVNVANILLVTGHITTTMTLGNTVLCLDADPEVAAKVRADRSLVPGAIEEALRVLSPSAALARGTSREVEVAGTVIPKDQIVMLWLGAGNRDPRQFTDPEVYDPTRDPNPHF-GFGRGIHFCLGAPLARLEGRVALNALFDRF------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192148 for 2706 contacts (-71.0/contact) +
2D Compatibility (PS) -37928 + (NN) -22785 + (LL) 3456
1D Compatibility (HY) -25600 + (ID) 6100
Total energy: -281105.0 ( -103.88 by residue)
QMean score : 0.464
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