Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLAAIAAGGPLP
2Y62 Chain:A ((6-242))
---QPIAAANWKCNGTTASIEKLVQ--VFNEHTISHD-VQCVVAPTFVHIPLVQAKLRNPKYVIS--AQN-AIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPE---------------
General information:
TITO was launched using:
RESULT:
Template:
2Y62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117498 for 1953 contacts (-60.2/contact) +
2D Compatibility (PS) -26747 + (NN) -19089 + (LL) 1624
1D Compatibility (HY) -16800 + (ID) 5050
Total energy: -183560.0 ( -93.99 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_2Y62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y62-query.scw
PDB file :
Tito_Scwrl_2Y62.pdb
: