Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPIPAPSPDARAVVTGASQNIGAALATELAARGHHLIVTARREDVLTELAARLADKYRVTVDVRPADLADPQERSKLADELAAR--PISILCANAGTATFGPIASLDLAGEK--TQVQLNAVAVHDLTLAVLP--GMIERKAGGILISGSAAGNSPIPYNATYAATKAFVNTFSESLRGELRGSGVHVTVLAPGPVRTELPDASEASLVEKLVPDFLWISTEH-----TARVSLNALERNKMRVVPGLTSKAMSVASQYAPRAIVAPIVGAFYKRLGGS
3CSD Chain:B ((29-241))
-----------ALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-GVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGR--LGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPM-----AASVREH--------TEEAFDRITARV-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3CSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108945 for 1536 contacts (-70.9/contact) +
2D Compatibility (PS) -21139 + (NN) -10307 + (LL) 4316
1D Compatibility (HY) -10800 + (ID) 3500
Total energy: -150375.0 ( -97.90 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_3CSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CSD-query.scw
PDB file :
Tito_Scwrl_3CSD.pdb
: