Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQLPRVGLGTDVHPIEPGRPCWLVGLLFPSADGCAGHSDGDVAVHALCDAVLSAAGLGDIGEVFGVDDPRWQGVSGADMLRHVVVLITQHGYRVGNAVVQVIGNRPKIGWRRLEAQAVLSRLLNAP---VSVSATTTDGLGLTGRGEGLAAIATALVVSLR
2PMP Chain:A ((5-159))
-----RIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMK--
General information:
TITO was launched using:
RESULT:
Template:
2PMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124354 for 1236 contacts (-100.6/contact) +
2D Compatibility (PS) -17120 + (NN) -12545 + (LL) 560
1D Compatibility (HY) -11200 + (ID) 2850
Total energy: -167509.0 ( -135.53 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_2PMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PMP-query.scw
PDB file :
Tito_Scwrl_2PMP.pdb
: