Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSPAPVQVMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWR-AVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATAVISALAALHGAWGVRVHDVRASVDAIKVVEAWMGAERIERDG
2DQW Chain:A ((26-287))
--LDRVRLLGVLNLTP-------------RALERAREMVAEGADILDLGAE-----------EEEKRRLLPVLEAVLSLGVPVSVDTRKPEVAEEALKLGAHLLNDVTGLR-DERMVALAARHGVAAVVMHMPVPDPATMM-AHARYRDVVAEVKAFLEAQARRALSAGVP--QVVLDPGFGFGKLLEHNLALLRRLDEIVALGHPVLVGLSRKRTIGELSGV-----EDPAQRVHGSVAAHLFAVMKGVRLLRVHDVRAHREALGVWEALYG--------
General information:
TITO was launched using:
RESULT:
Template:
2DQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146580 for 1995 contacts (-73.5/contact) +
2D Compatibility (PS) -26677 + (NN) -21175 + (LL) 824
1D Compatibility (HY) -18800 + (ID) 5050
Total energy: -217458.0 ( -109.00 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_2DQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DQW-query.scw
PDB file :
Tito_Scwrl_2DQW.pdb
: