Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMENEFTYEDYETTAKWLLQHTEYRPQVAVICGSGLGGLTAHLKEAQIFDYNEIPNFPQSTVQGHAGRLVFGLLNGRCCVMMQGRFHMYEGYSLSKVTFPVRVFHLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFCGQNPLRGPNDERFGVRFPAMSDAYDRDMRQKAFTAWKQMGEQRKLQEGTYVMLAGPNFETVAESRLLKMLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVVMDYENLEKANHMEVLDAGKAAAQTLERFVSILMESIPLPDRGS
4LNA Chain:A ((24-293))------FEQIQETTQFIQSKITLRPAIGIILGTGLGALTNELDIDTTIPYETIPHFPLSTV---SGKLLIGTLGGKSVVVMQGRFHYYEGYTMQQVTYPVRVMHALGIQTLLVSNAAGGMNPTFQTSDLMVIDDHISL--LLPQNPLICPNPPIFGDRFPDMSEPYRKSLIDLAFSVAAELDI--PLKRGVYVSVTGPQLETRAEYRMLRQWGADAVGMSTVPEVIVANQLGMDVFGISVITDLCFPDT--LEKAELVKILATAAQAEPKLTMLIREMIGRL-------


General information:
TITO was launched using:
RESULT:

Template: 4LNA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -213898 for 2255 contacts (-94.9/contact) +
2D Compatibility (PS) -28609 + (NN) -15255 + (LL) 164
1D Compatibility (HY) -30800 + (ID) 6100
Total energy: -294498.0 ( -130.60 by residue)
QMean score : 0.488

(partial model without unconserved sides chains):
PDB file : Tito_4LNA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4LNA-query.scw
PDB file : Tito_Scwrl_4LNA.pdb: