Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNRDFRVRDQLETFGVRVSALIIENQKLLLIYAPHLDKYYLPGGALQVGEDSNKAVAREVLEEIGLHSQVGDLAYIVENQFNIKRHHYHSVEFLYFVNLLGQAPESIKEGTHKRHFVWLPIKELTKIDCNPNFLAQDLIEWPGHVVHKIVQN
3GWY Chain:A ((2-129))
-------------KSIEVVAAVIRLGEKYLCVQR---FRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYP----DFEITMHAFLCHPVGQ-RYV---LKEHIAAQWLSTREMAILD-WAEADKPIVRKISE---------
General information:
TITO was launched using:
RESULT:
Template:
3GWY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76629 for 854 contacts (-89.7/contact) +
2D Compatibility (PS) -12509 + (NN) -335 + (LL) 3100
1D Compatibility (HY) -4800 + (ID) 1250
Total energy: -92423.0 ( -108.22 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_3GWY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GWY-query.scw
PDB file :
Tito_Scwrl_3GWY.pdb
: