Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRRHSYLSPIATGVIVGLGIQGYLLALRYLAEHVGT
3N8K Chain:G ((28-170))
--ELIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRRHSYLSPIATGVIVGLGIQGYLLALRYLAEHV--
General information:
TITO was launched using:
RESULT:
Template:
3N8K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117030 for 1164 contacts (-100.5/contact) +
2D Compatibility (PS) -15916 + (NN) -6680 + (LL) 60
1D Compatibility (HY) -20000 + (ID) 7150
Total energy: -166716.0 ( -143.23 by residue)
QMean score : 0.668
(partial model without unconserved sides chains):
PDB file :
Tito_3N8K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N8K-query.scw
PDB file :
Tito_Scwrl_3N8K.pdb
: