Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
FIFLALLGAAVAFPVDDDDKIVGGYTCGANTVPYQVSLNS-GYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGPVVCSGKLQGIVSWG-SGCAQKNKPGVYTKVCNYVSWIKQTIASN
1LO6 Chain:A ((1-221))
--------------------LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTAD-G-DFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLVCGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ--
General information:
TITO was launched using:
RESULT:
Template:
1LO6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130813 for 1895 contacts (-69.0/contact) +
2D Compatibility (PS) -24079 + (NN) -13786 + (LL) 1452
1D Compatibility (HY) -18000 + (ID) 4950
Total energy: -190176.0 ( -100.36 by residue)
QMean score : 0.698
(partial model without unconserved sides chains):
PDB file :
Tito_1LO6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LO6-query.scw
PDB file :
Tito_Scwrl_1LO6.pdb
: