Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRALLFLALVGAAVAFPVDDDDKIVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN
3L3T Chain:A ((1-223))
-----------------------IVGGYTCEENSLPYQVSLNSGSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDAGGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIAAN
General information:
TITO was launched using:
RESULT:
Template:
3L3T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152436 for 1881 contacts (-81.0/contact) +
2D Compatibility (PS) -24660 + (NN) -12058 + (LL) 2020
1D Compatibility (HY) -28000 + (ID) 8650
Total energy: -223784.0 ( -118.97 by residue)
QMean score : 0.814
(partial model without unconserved sides chains):
PDB file :
Tito_3L3T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L3T-query.scw
PDB file :
Tito_Scwrl_3L3T.pdb
: