Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MESPASSQPASMPQSKGKSKRKKDLRISCMSKPPAPNPTPPRNLDSRTFITIGDRNFEVEADDLVTISELGRGAYGVVEKVRHAQSGTIMAVKRIRATVNSQEQKRLLMDLDINMRTVDCFYTVTFYGALFREGDVWICMELMDT-SLDKF--YRKVLDKNMT--IPEDILGEIAVSIVRALEHLHSKLSVIHRDVKPSNVLINKEGHVKMCDFGISGYLVDSVAKTMDAGCKPYMAPERINPELNQKGYNVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQVVEEPSPQLPADR----------FSPEFVDFTAQCLRKNPAERMSYLELMEHPFFTLHKTKKTDIAAFVKEILGEDS |
2PMN Chain:X ((104-341)) | -------------------------------------------------------------------------------------------------------------------------YCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKG-SRGTYEFMPPEFFSNESSYNG--AKVDIWSLGICLYVMFYNVVPF-SLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNFLSNEDIDFLKLFLRKNPAERITSEDALKHEW--LADTNIEDLREFSKELYKKRK |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2PMN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -98386 for 1642 contacts (-59.9/contact) +
2D Compatibility (PS) -22402 + (NN) -4126 + (LL) 7376
1D Compatibility (HY) -20000 + (ID) 4100
Total energy: -141638.0 ( -86.26 by residue)
QMean score : 0.426
|
|
|