Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWSRLVAMCCFCLLLTGVSSCSKRGVNAINKMNFVVKQMKEKRVFFDYDKSDISEAGADTLLDVMEVLQDDPNVKVTLIGHTDNRGSYEYNVALGARRADAAKNFMVSCTPYLENRIKTASKGETEPLVYVADDSKNSKYEKEHAKNRRVEFSFSGMKK
2HQS Chain:H ((4-111))
---------------------------------------QNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKG-VSADQISIVSYGKEKPAVLGH-----D--EAAYSKNRRAVLVYL----
General information:
TITO was launched using:
RESULT:
Template:
2HQS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15207 for 801 contacts (-19.0/contact) +
2D Compatibility (PS) -11940 + (NN) -7855 + (LL) 3484
1D Compatibility (HY) -4400 + (ID) 1950
Total energy: -37868.0 ( -47.28 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_2HQS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HQS-query.scw
PDB file :
Tito_Scwrl_2HQS.pdb
: